Bioinformatics Pipeline Engineer

| Austin
Apply now
By clicking continue you agree to Built In’s Privacy Policy and Terms of Use.

Invitae is dedicated to bringing comprehensive genetic information into mainstream medicine to improve healthcare for billions of people. Our team is driven to make a difference for the patients we serve. We are leading the transformation of the genetics industry, by making genetic testing affordable and accessible for everyone to guide health decisions across all stages of life. 

Our development team works on a variety of projects ranging from innovations in healthcare systems to taming the chaos of biology. We are constantly improving our tools and technologies to deliver the highest quality actionable information to doctors and patients. Behind every sample that comes in through the door we know there is an individual and a family looking for answers.

What you’ll do:
  • Maintaining, improving, and adding to our catalog of production bioinformatics pipelines across an expanding set of modern assays
  • Scaling our pipelines 
  • Collaborate closely with bioinformaticians, molecular biologists, and software engineers

What you bring:

  • Strong experience in bioinformatics and pipeline efforts
  • Passion about writing clean, reusable, and composable bioinformatics pipelines
  • Capability to lead technical efforts
  • Strong experience analyzing data from a range of genetics technologies (especially Illumina and PacBio sequencing and arrays)
  • Passion to contribute to source code for large open source projects with Python knowledge required
  • Excellent communication (written and verbal) and data presentation skills
  • Preferred: Experience with High-Performance Computing (HPC) environments (e.g. S/UGE, LSF, and/or Amazon AWS)
  • Preferred: Experience with Distributed Workflow managers, e.g. airflow, luigi, COSMOS
  • Preferred: Experience using and designing RESTful and RPC-style interfaces
  • Preferred: Experience with Docker or other containerization/virtualization
  • Preferred: Experience with CI/CD

At Invitae, you’ll work alongside some of the world’s experts in genetics and healthcare at the forefront of genetic medicine. Our teams thrive in our dynamic organization, which has been designed to empower them to make the biggest impact they can for our patients.  We give our employees the ability to explore interests and capabilities broadly within the organization. We prize freedom with accountability and offer significant flexibility. We also provide excellent benefits and competitive compensation in a fast-growing organization. 

At Invitae, we’re changing healthcare to change lives. Join us.

At Invitae, we value diversity and provide equal employment opportunities (EEO) to all employees and applicants without regard to race, color, religion, national origin, gender, sexual orientation, age, marital status, veteran status, or disability status. We will consider for employment qualified applicants with criminal histories in a manner consistent with the requirements of the San Francisco Fair Chance Ordinance.

Read Full Job Description
Apply now
By clicking continue you agree to Built In’s Privacy Policy and Terms of Use.

Technology we use

  • Engineering
    • C#Languages
    • C++Languages
    • JavaLanguages
    • JavascriptLanguages
    • PHPLanguages
    • PythonLanguages
    • SqlLanguages

Location

Situated in Austin's Central Business District, one block West of the Texas State Capitol.

What are Invitae Perks + Benefits

Invitae Benefits Overview

At Invitae, our employees are the key to our continued success. Our culture is one of our most important strengths. A set of commitments we make to each other and to our customers to build a world-class organization in service of our mission. That is why Invitae proudly offers comprehensive perks and benefits program with choice and flexibility in mind.

Culture
Friends outside of work
Eat lunch together
Intracompany committees
Daily sync
Team owned deliverables
Team based strategic planning
Group brainstorming sessions
Open office floor plan
Diversity
Dedicated Diversity/Inclusion Staff
Unconscious bias training
Diversity manifesto
Someone's primary function is managing the company’s diversity and inclusion initiatives
Mean gender pay gap below 10%
Diversity Employee Resource Groups
Hiring Practices that Promote Diversity
Health Insurance & Wellness Benefits
Flexible Spending Account (FSA)
Disability Insurance
Dental Benefits
Vision Benefits
Health Insurance Benefits
Life Insurance
Pet Insurance
Wellness Programs
Team workouts
Mental Health Benefits
Retirement & Stock Options Benefits
401(K)
Company Equity
Employee Stock Purchase Plan
Performance Bonus
Child Care & Parental Leave Benefits
Generous Parental Leave
Flexible Work Schedule
Remote Work Program
Family Medical Leave
Adoption Assistance
Return-to-work program post parental leave
Vacation & Time Off Benefits
Unlimited Vacation Policy
Sabbatical
Paid Holidays
Paid Sick Days
Perks & Discounts
Beer on Tap
Casual Dress
Commuter Benefits
Company Outings
Free Daily Meals
Game Room
Stocked Kitchen
Some Meals Provided
Happy Hours
Parking
Pet Friendly
Recreational Clubs
Home Office Stipend for Remote Employees
Professional Development Benefits
Job Training & Conferences
Diversity Program
Lunch and learns
Cross functional training encouraged
Promote from within
Mentorship program
More Jobs at Invitae63 open jobs
All Jobs
Data + Analytics
Dev + Engineer
HR + Recruiting
Legal
Marketing
Operations
Product
Project Mgmt
Sales
Operations
new
Remote
Data + Analytics
new
Remote
Developer
new
Remote
Developer
new
Austin
Developer
new
Austin
Developer
new
Austin
Data + Analytics
new
Austin
Data + Analytics
new
Remote
HR + Recruiting
new
Austin
Operations
new
Austin
Developer
new
Remote
Operations
new
Remote
Developer
new
Austin
Data + Analytics
new
Austin
Operations
new
Austin
Developer
new
Austin
Operations
new
Remote
Data + Analytics
new
Austin
Project Mgmt
new
Remote
Data + Analytics
new
Austin
Developer
new
Austin
Project Mgmt
new
Remote
Developer
new
Austin
Project Mgmt
new
Remote
HR + Recruiting
new
Remote
Data + Analytics
new
Remote
Developer
new
Austin
Developer
new
Austin
Data + Analytics
new
Austin
Data + Analytics
new
Austin
Developer
new
Austin
Apply now
By clicking continue you agree to Built In’s Privacy Policy and Terms of Use.
Save jobView Invitae's full profileSee more Invitae jobs